SNP Profiles of MO 9   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._MO_9
AAACCTCC____CCCCGG_CC_
6._MO_9
AAACCTCC____CCCCGG_CC_
7._MO_9
AAACCTCC____CCCCGG_CC_
8._MO_9
AAACCTCC____CCCCGG_CC_
9._MO_9
AAACCTCC____CCCCGG_CC_
10._MO_9
AAACCTCC____CCCCGG_CC_
11._RUQ_1691
___CC__CT_______
12._GC-05-119-3-21
AAACCTACGGAGCTCTCTCTAGCTCTCT
13._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
14._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
15._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
16._GC-05-071-2-22
_ACCTACGGAGCTCTCTCTAGCTCTCT
17._MO_9
AAACCTAC____CTCTAG_CT_
18._MO_9
AAACCTAC____CTCTAG_CT_
19._MO_9
AAACCTAC____CTCTAG_CT_
20._MO_9
AAACCTAC____CTCTAG_CT_
21._MO_9
_ACCTAC____CTCTAG_CT_
22._RUQ_1691
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGGGCCCGTTAATTGGAAAACC
1._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
2._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
3._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
4._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
5._MO_9
___GG__CG____AAAA_
6._MO_9
___GG__CG____AAAA_
7._MO_9
___GG__CG____AAAA_
8._MO_9
___GG__CG____AAAA_
9._MO_9
___GG__CG____AAAA_
10._MO_9
___GG__CG____AAAA_
11._RUQ_1691
___GGTT_________
12._GC-05-119-3-21
ATACAAAGCGCCCGCTAATTGGATATGG
13._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
14._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
15._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
16._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
17._MO_9
___AG__CG____ATAT_
18._MO_9
___AG__CG____ATAT_
19._MO_9
___AG__CG____ATAT_
20._MO_9
___AG__CG____ATAT_
21._MO_9
___AG__CG____ATAT_
22._RUQ_1691
TTCCAGGGCC_CGAAAAAAGGAAAAGG
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGGTGGTTGG
1._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
2._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
3._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
4._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
5._MO_9
GGAA___GG_AGGT__GG__
6._MO_9
GGAA___GG_AGGT__GG__
7._MO_9
GGAA___GG_AGGT__GG__
8._MO_9
GGAA___GG_AGGT__GG__
9._MO_9
GGAA___GG_AGGT__GG__
10._MO_9
GGAA___GG_AGGT__GG__
11._RUQ_1691
GG____GG_AG____TT_
12._GC-05-119-3-21
CCATTTGTAGCGACAGGGGTGTAACCAG
13._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
14._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
15._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
16._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
17._MO_9
CCAT___CG_AGGG__AA__
18._MO_9
CCAT___CG_AGGG__AA__
19._MO_9
CCAT___CG_AGGG__AA__
20._MO_9
CCAT___CG_AGGG__AA__
21._MO_9
CCAT___CG_AGGG__AA__
22._RUQ_1691
CCAAAAAAAGGGCCAGACCCACGGAAGG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAGGGCCCC
1._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
2._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
3._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
4._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
5._MO_9
___CC________CCCC
6._MO_9
___CC________CCCC
7._MO_9
___CC________CCCC
8._MO_9
___CC________CCCC
9._MO_9
___CC________CCCC
10._MO_9
___CC________CCCC
11._RUQ_1691
_____GG________
12._GC-05-119-3-21
CCGGATCCAGAAAACTACAGAGGGCTCT
13._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
14._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
15._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
16._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
17._MO_9
___CC________CTCT
18._MO_9
___CC________CTCT
19._MO_9
___CC________CTCT
20._MO_9
___CC________CTCT
21._MO_9
___CC________CTCT
22._RUQ_1691
GGCC_GG_GGAAGG_GGAGCCGGGG
 5758596061626364656667686970
_Input profile
TTCCCTCTAAGGGGACAAGTGGAGCTCC
1._GC-05-119-3-21
TTCCCTCTAAGGGGACAAGTGGAGCTCC
2._GC-05-119-3-21
TTCCCTCTAAGGGGACAAGTGGAGCTCC
3._GC-05-071-2-22
TTCCCTCTAAGGGGACAAGTGGAGCTCC
4._GC-05-119-3-21
TTCCCTCT_GGGGACAAGTGGAGCTCC
5._MO_9
_CC_CTAAGG_ACAAGTGG___
6._MO_9
_CC_CTAAGG_ACAAGTGG___
7._MO_9
_CC_CTAAGG_ACAAGTGG___
8._MO_9
_CC_CTAAGG_ACAAGTGG___
9._MO_9
_CC_CT_GG_ACAAGTGG___
10._MO_9
___CTACGG_ACAAGTGG___
11._RUQ_1691
_______ACAA_GGAG__
12._GC-05-119-3-21
TTCGCTTTACCGAGAAAGGTGTAGCTCC
13._GC-05-071-2-22
TTCGCTTTACCGAGAAAGGTGTAGCTCC
14._GC-05-071-2-22
TTCGCTTTACCGAGAAAGGTGTAGCTCC
15._GC-05-071-2-22
TTCGCTTTACCGAGAAAGGTGTAGCTCC
16._GC-05-071-2-22
TTCGCTTTACCGAGAAAGGTGTAGCTCC
17._MO_9
_CG_TTACCG_AAAGGTGT___
18._MO_9
_CG_TTACCG_AAAGGTGT___
19._MO_9
_CG_TTACCG_AAAGGTGT___
20._MO_9
_CG_TTACCG_AAAGGTGT___
21._MO_9
_CG_TTACCG_AAAGGTGT___
22._RUQ_1691
AAGGAGAGACGGGGACAAACCCAG__
 7172737475767778798081828384
_Input profile
AACTCCAGCCACGGCCCGCCTTAATTCT
1._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
2._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
3._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
4._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
5._MO_9
AACT_____CCCG___TTCT
6._MO_9
AACT_____CCCG___TTCT
7._MO_9
AACT_____CCCG___TTCT
8._MO_9
AACT_____CCCG___TTCT
9._MO_9
AACT_____CCCG___TTCT
10._MO_9
AACT_____CCCG___TTCT
11._RUQ_1691
AA______CCCG__AA__
12._GC-05-119-3-21
AACTACGGCCACAAACCGCTAAACTTCT
13._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
14._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
15._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
16._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
17._MO_9
AACT_____ACCG___TTCT
18._MO_9
AACT_____ACCG___TTCT
19._MO_9
AACT_____ACCG___TTCT
20._MO_9
AACT_____ACCG___TTCT
21._MO_9
AACT_____ACCG___TTCT
22._RUQ_1691
_AGCCAGCCAC_CCCGGGTTAAAAAG
 858687888990919293     
_Input profile
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
6._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
7._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
8._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
9._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
10._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
11._RUQ_1691
CC__CT_TT___X_XX_XX_XX_XX_X
12._GC-05-119-3-21
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
13._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
14._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
15._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
16._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
17._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
18._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
19._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
20._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
21._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
22._RUQ_1691
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: MO_9 GC-05-071-2-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MO_9 GC-05-119-3-21

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

8._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

10._MO_9

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._MO_9 RUQ_1691

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._MO_9 GC-05-119-3-21

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

14._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

15._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._MO_9 GC-05-071-2-22

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

20._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

21._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._MO_9 RUQ_1691

49.4 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240